ABySS 2.1.0

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

Accessing the software

To load the module:

$ module load ABySS/2.1.0-iomkl-2018a

Command-line options can be viewed by issuing the following command with the module loaded:

$ ABYSS --help

A collection of binaries for this application can be found at ${EBROOTABYSS}/bin with the module loaded.

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the ABySS website for more information regarding this application.


Last modified: 25 June 2018