BEDOPS 2.4.30

BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

Accessing the software

To load the module:

$ module load BEDOPS/2.4.30

An example command to include in your job script:

bedops --intersect A.bed B.bed C.bed \
    | bedmap --echo --mean - D.bed \
    | ... \ # can have as many pipe operations as necessary
    > Answer.bed

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the website for more information regarding this application.


Last modified: 9 March 2018