bcl2fastq2 2.20.0

The bcl2fastq2 conversion software is a tool to handle BCL conversion and demultiplexing.

Accessing the software

To load the module:

$ module load bcl2fastq2/2.20.0-iomkl-2018a-Python-2.7.14

An example command to include in your job script:

$ bcl2fastq

Note that this will take input from RunInfo.xml by default.

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

The following previous versions of this application on the BlueBEAR service:

Known Problems & Limitations


Other Information

The Support Level for this application is An.

Visit the website for more information about this application.

Last modified: 20 March 2019