chiron 0.4.2

A basecaller for Oxford Nanopore Technologies' sequencers, using a deep learning CNN+RNN+CTC structure to establish end-to-end basecalling for the nanopore sequencer.Built with TensorFlow and Python 2.7.

Accessing the software

To load the module (use the CUDA version if you require GPU compute):

module load chiron/0.4.2-foss-2018b-Python-3.6.6
module load chiron/0.4.2-fosscuda-2018b-Python-3.6.6

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

Previous versions of this application are recorded below:

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations


Other Information

The Support Level for this application is An.

Visit the chiron website for more information regarding this application.

Last modified: 20 March 2019