CNV-seq is described as a new method to detect copy number variation using high-throughput sequencing.

Accessing the software

To load the module:

$ module load apps/cnv-seq

An example command to include in your job script: --test test.hits --ref ref.hits -genome chrom1 # where the input files are test.hits and ref.hits

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations


Other Information

The Support Level for this application is An.

Visit the CNV-seq GitHub repository for more information regarding this application.

Last modified: 10 November 2017