Delly2 v0.7.2

Delly2 is an integrated structural variant prediction method that can discover and genotype deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends and split-reads to sensitively and accurately delineate genomic rearrangements throughout the genome.

Accessing the software

To load the module:

$ module load apps/delly2/v0.7.2

An example command to include in your job script:

delly -t DEL -o del.vcf -g ref.fa sample1.sort.bam sample2.sort.bam

This runs delly2 with SV type DEL and SV output file del.vcf using genome FASTA file ref.fa and bam files sample1.sort.bam and sample2.sort.bam

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the Delly2 website for more information regarding this application.


Last modified: 16 November 2017