Genome STRiP v2.00.1636

Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovery and genotyping of structural variation using whole-genome sequencing data. The methods used in Genome STRiP are designed to find shared variation using data from multiple individuals. Genome STRiP looks both across and within a set of sequenced genomes to detect variation.

Accessing the software

To load the module:

$ module load apps/genomestrip/v2.00.1636

An example command to include in your job script:

cd ${SV_DIR}/cookbook/genotyping/1000G_phase1_local
scripts/genotype_sites.sh example/1000G_MERGED_DEL_2_99615.vcf ${SLURM_SUBMIT_DIR}

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the Genome STRiP website for more information regarding this application.


Last modified: 23 November 2017