GffCompare 0.10.2

GffCompare is a tool that can:

  • compare and evaluate the accuracy of RNA-Seq transcript assemblers (Cufflinks, Stringtie).
  • collapse (merge) duplicate transcripts from multiple GTF/GFF3 files (e.g. resulted from assembly of different samples)
  • classify transcripts from one or multiple GTF/GFF3 files as they relate to reference transcripts provided in a annotation file (also in GTF/GFF3 format)

Accessing the software

To load the module:

$ module load GffCompare/0.10.2-foss-2016.10

To see options for GffCompare run the following command:

$ gffcompare --help

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations


Other Information

The Support Level for this application is An.

Visit the Github repository for more information regarding this application.

Last modified: 5 March 2018