GTOOL 0.7.5

GTOOL is a program for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE.

GTOOL can be used to:
  • generate subsets of genotype data,
  • to convert genotype data between the PED file format and the file format used by SNPTEST and IMPUTE,
  • merge genotype datasets together,
  • orient genotype data according to a strand file.

Accessing the software

To load the module:

$ module load apps/gtool/0.7.5

To view the command-line options for this application, run the following command:

$ gtool

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations


Other Information

The support level for this software is An.

Visit the GTOOL website for more information on this application.

Last modified: 14 August 2017