HTSeq v0.9.1

HTSeq is a Python package that provides infrastructure to process data from high-throughput sequencing assays. In the analysis of high-throughput sequencing data, it is often necessary to write custom scripts to form the “glue” between tools or to perform specific analysis tasks. HTSeq is a Python package to facilitate this.

Accessing the software

To load the module:

$ module load apps/htseq/v0.9.1

HTSeq is a Python package. It needs to be imported into your Python script to be used:

import HTSeq

<HTSeq commands>

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

A previous version of this application is recorded below:

Known Problems & Limitations

None.

Other Information

The support level for this software is An.

Visit the HTSeq website for more information on this application.


Last modified: 14 August 2017