OncoSNP 1.4

OncoSNP is an analytical tool for characterising copy number alterations and loss-of-heterozygosity (LOH) events in cancer samples from SNP genotyping data. It was originally developed at the Department of Statistics, University of Oxford in collaboration with the Genomics Group, Wellcome Trust Centre of Human Genetics, University of Oxford and the Ludwig Colon Cancer Laboratory, Ludwig Institute of Cancer Research.

Accessing the software

To load the module:

$ module load apps/oncosnp/1.4

To run this application, issue the following command:

$ run_oncosnp.sh ${MCR_ROOT}/v82 <options>
where <options> should be replaced with options recognised by OncoSNP.

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations


Other Information

The Support Level for this application is An.

Visit the OncoSNP website for more information regarding this application.

OncoSNP-Seq is a similar application and may be of interest if you are using this application.

Last modified: 11 September 2017