pVACtools 1.0.4

pVACtools is a cancer immunotherapy tools suite consisting of the following tools:

  • pVACseq - A cancer immunotherapy pipeline for identifying and prioritizing neoantigens from a list of tumor mutations.
  • pVACfuse - A tool for detecting neoantigens resulting from gene fusions.
  • pVACvector - A tool designed to aid specifically in the construction of DNA-based cancer vaccines.

Accessing the software

To load the module:

$ module load pVACtools/1.0.4-iomkl-2018a-Python-3.6.3

Command-line options can be viewed for each of the above tools. These can be viewed by issuing the respective command below for the tool you wish to use (pVACseq, pVACfuse or pVACvector):

$ pvacseq -h
$ pvacfuse -h
$ pvacvector -h

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the pVACtools website for more information regarding this application.


Last modified: 31 May 2018


Colleges

Professional Services