PhyloSift v1.0.1

PhyloSift is a suite of software tools to conduct phylogenetic analysis of genomes and metagenomes.

Accessing the software

To load the module:

$ module load apps/phylosift/v1.0.1

An example command to include in your job script:

phylosift all <sequence_file>

The module command also sets the following environment variables:

  • PHYLOSIFT_DB refers to the directory containing the database with sub-directories markersand ncbi.

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the PhyloSift website for more information regarding this application.


Last modified: 7 December 2017