picard 2.10.5

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Accessing the software

To load the module:

$ module load apps/picard/2.10.5-java-1.8.0_92

This application is packaged as a jar file. To run the application, issue the following command:

$ java -jar $EBROOTPICARD/picard.jar

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations


Other Information

The Support Level for this application is An.

Visit the picard Github repository for more information regarding this application.

Last modified: 30 August 2017