pizzly 0.37.3

pizzly is a program for detecting gene fusions from RNA-Seq data of cancer samples. It requires running kallisto with the --fusion parameter (available in kallisto version 0.43.1 or later). This service supports kallisto 0.44.0.

Accessing the software

To load the module:

$ module load pizzly/0.37.3-iomkl-2018a-Python-3.6.3

To view command-line options, run the following command with the module loaded:

$ pizzly --help

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the pizzly Github repository for more information regarding this application.


Last modified: 7 June 2018