RSeQC 2.6.4

RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc.

Accessing the software

To load the module:

$ module load RSeQC/2.6.4-iomkl-2018a-Python-2.7.14-R-3.4.3

An example command to include in your job script:

python ${EBROOTRSEQC}/bin/bam2fq.py -i test_PairedEnd_StrandSpecific_hg19.sam -o bam2fq_out1 

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the website for more information regarding this application.


Last modified: 5 March 2018


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