RSICNV, no version number

RSICNV detects copy number variations based on read depths of high coverage whole genome sequencing using the robust segment identification algorithm with negative binomial transformations.

Accessing the software

To load the module:

$ module load apps/rsicnv

An example command to include in your job script:

rsicnv rsi -f refFile -b bamFile -o cnvFile

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations


Other Information

The Support Level for this application is An.

Visit the rsicnv website for more information regarding this application.

Last modified: 7 December 2017