tombo 1.4

Tombo is a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data.

Tombo also provides tools for the analysis and visualization of raw nanopore signal.

Accessing the software

To load the module:

$ module load tombo/1.4-iomkl-2018a-Python-3.6.3

An example command to include in your job script:

tombo <command> <options>

where <command> is any command from the following set:

{filter_coverage, plot_motif_centered, plot_max_coverage, plot_most_significant, plot_per_read, plot_correction, resquiggle, write_most_significant_fasta, test_significance, estimate_reference, estimate_alt_reference, plot_max_difference, filter_stuck, plot_motif_with_stats, clear_filters, plot_multi_correction, write_wiggles, model_resquiggle, plot_kmer, plot_genome_location, event_resquiggle, cluster_most_significant, estimate_scale}

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

Previous versions of this application are recorded below:

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the Tombo documentation for more information regarding this application.


Last modified: 04 December 2018


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