Trim Galore! v0.4.2

Trim Galore! is a wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.

Accessing the software

To load the module:

$ module load apps/trimgalore/v0.4.2

An example command to include in your job script:

trim_galore <MyFastqFile>

Accessing Previous Versions

Wherever possible, previous versions of this application will be retained for continuity, especially for research projects that require a consistent version of the software throughout the project. Such versions, however, may be unsupported by IT Services or the applications vendor, and may be withdrawn at short or no notice if they can no longer run on the cluster - for example, essential operating system upgrades may be incompatible with old versions.

At present there are no previous versions of this application on the BlueBEAR service.

Known Problems & Limitations

None.

Other Information

The Support Level for this application is An.

Visit the TrimGalore! web site for more information regarding this application.

cutadapt and FastQC are available on BlueBEAR and are made available when running the Trim Galore! module as described above. cutadapt is a module installed in Python 2.7.10.


Last modified: 8 December 2017